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BDBM50272984

E3L050609
Internal ID: BDB050609
Activity data available Local docking-ready structure
Dock with P37231
Structure
/e3_file/ligand_db/generated/BDB050609/BDB050609.sdf
Basic Properties
Compound ID
E3L050609
Internal ID
BDB050609
Molecular formula
C19H12F4O2
Molecular weight
348.295000
Exact mass
348.077343
XLogP
5.2568
TPSA
37.3000
HBA / HBD
1 / 1
Rotatable bonds
3
Heavy atoms / rings
25 / 3
Activity summary
EC50 unknown 2500.00000000 nM
1 activity record(s) imported
InChIKey
SQPNVCUGHYUOEK-KPKJPENVSA-N
SMILES
O=C(O)CC1=C/C(=C\c2ccc(C(F)(F)F)cc2)c2ccc(F)cc21
Aliases
BDBM50272984 (preferred) (E)-2-(5-Fluoro-1-(4-(trifluoromethyl)benzylidene)-1H-inden-3-yl)ethanoic acid (source_name) BDBM50272984 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P37231 PPARG;NR1C3
Peroxisome proliferator-activated receptor gamma		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50272984 medium
; target=Peroxisome proliferator-activated receptor gamma
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50272984 Open - 10.1021/jm700969c PMID: 18665581
PubChem CID25034326 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)CC1=C/C(=C\c2ccc(C(F)(F)F)cc2)c2ccc(F)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB050609/BDB050609.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB050609/BDB050609.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB050609/BDB050609.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB050609/BDB050609.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB050609/BDB050609.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Peroxisome proliferator-activated receptor gamma
P37231
E3 ligase component 		BindingDB:BDBM50272984 EC50 2500 nM Low DOI: 10.1021/jm700969c
PMID: 18665581 		1