< Back to small molecule database

BDBM50276934

E3L050772
Internal ID: BDB050772
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB050772/BDB050772.sdf
Basic Properties
Compound ID
E3L050772
Internal ID
BDB050772
Molecular formula
C28H21N5O
Molecular weight
443.510000
Exact mass
443.174610
XLogP
6.0822
TPSA
96.6900
HBA / HBD
4 / 3
Rotatable bonds
4
Heavy atoms / rings
34 / 6
Activity summary
IC50 unknown 140.00000000 nM
1 activity record(s) imported
InChIKey
IWRSEDFUBNYNQS-UHFFFAOYSA-N
SMILES
Cc1cccc2c(Nc3ccc(-c4nc5c(C(N)=O)cccc5[nH]4)cc3)c3ccccc3nc12
Aliases
BDBM50276934 (preferred) 2-[4-[(4-methylacridin-9-yl)amino]phenyl]-1H-benzimidazole-4-carboxamide (source_name) BDBM50276934 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50276934 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50276934 Open - 10.1016/j.ejmech.2017.07.050 PMID: 28763648
PubChem CID145962087 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cccc2c(Nc3ccc(-c4nc5c(C(N)=O)cccc5[nH]4)cc3)c3ccccc3nc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB050772/BDB050772.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB050772/BDB050772.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB050772/BDB050772.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB050772/BDB050772.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB050772/BDB050772.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50276934 IC50 140 nM Moderate DOI: 10.1016/j.ejmech.2017.07.050
PMID: 28763648 		1