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BDBM50287052

E3L051027
Internal ID: BDB051027
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB051027/BDB051027.sdf
Basic Properties
Compound ID
E3L051027
Internal ID
BDB051027
Molecular formula
C28H35N3O5
Molecular weight
493.604000
Exact mass
493.257671
XLogP
4.5592
TPSA
96.8000
HBA / HBD
6 / 2
Rotatable bonds
8
Heavy atoms / rings
36 / 5
Activity summary
IC50 unknown 0.50000000 nM
2 activity record(s) imported
InChIKey
RDTWWOGVLSHQRK-UHFFFAOYSA-N
SMILES
CCN(c1cc2oc(C3CC3)cc2c(C(=O)NCc2c(OC)cc(C)[nH]c2=O)c1C)C1CCOCC1
Aliases
BDBM50287052 (preferred) 2-cyclopropyl-6-[ethyl(oxan-4-yl)amino]-N-[(4-methoxy-6-methyl-2-oxo-1H-pyridin-3-yl)methyl]-5-methyl-1-benzofuran-4-carboxamide (source_name) BDBM50287052 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50287052 medium
; target=Polycomb protein EED
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50287052 medium
; target=Polycomb protein EED
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50287052 Open - 10.1021/acsmedchemlett.7b00437 PMID: 29456795
PubChem CID145956125 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCN(c1cc2oc(C3CC3)cc2c(C(=O)NCc2c(OC)cc(C)[nH]c2=O)c1C)C1CCOCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB051027/BDB051027.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB051027/BDB051027.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB051027/BDB051027.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB051027/BDB051027.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB051027/BDB051027.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb protein EED
Q09028
E3 ligase component 		BindingDB:BDBM50287052 IC50 0.5 nM Very high DOI: 10.1021/acsmedchemlett.7b00437
PMID: 29456795 		1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50287052 IC50 0.5 nM Very high DOI: 10.1021/acsmedchemlett.7b00437
PMID: 29456795 		1