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BDBM50309232

E3L051781
Internal ID: BDB051781
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB051781/BDB051781.sdf
Basic Properties
Compound ID
E3L051781
Internal ID
BDB051781
Molecular formula
C25H32FN5O3
Molecular weight
469.561000
Exact mass
469.248918
XLogP
1.9332
TPSA
98.4000
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
34 / 4
Activity summary
IC50 unknown 2.70000000 nM
1 activity record(s) imported
InChIKey
AIHVYRFQEKDZCU-UHFFFAOYSA-N
SMILES
CNC1(C(=O)N2CCN(C(=O)c3cc(Cc4n[nH]c(=O)c(C)c4C)ccc3F)CC2)CCCC1
Aliases
BDBM50309232 (preferred) 6-(4-fluoro-3-(4-(1-(methylamino)cyclopentanecarbonyl)piperazine-1-carbonyl)benzyl)-4,5-dimethylpyridazin-3(2H)-one (source_name) BDBM50309232 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50309232 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50309232 Open - 10.1016/j.bmcl.2009.11.087 PMID: 20022747
PubChem CID46230328 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNC1(C(=O)N2CCN(C(=O)c3cc(Cc4n[nH]c(=O)c(C)c4C)ccc3F)CC2)CCCC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB051781/BDB051781.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB051781/BDB051781.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB051781/BDB051781.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB051781/BDB051781.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB051781/BDB051781.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50309232 IC50 2.7 nM Very high DOI: 10.1016/j.bmcl.2009.11.087
PMID: 20022747 		1