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BDBM50309235

E3L051784
Internal ID: BDB051784
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB051784/BDB051784.sdf
Basic Properties
Compound ID
E3L051784
Internal ID
BDB051784
Molecular formula
C28H36FN5O3
Molecular weight
509.626000
Exact mass
509.280218
XLogP
2.8096
TPSA
89.6100
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 2.70000000 nM
1 activity record(s) imported
InChIKey
RGBUEKBEKGTQBO-UHFFFAOYSA-N
SMILES
Cc1c(Cc2ccc(F)c(C(=O)N3CCN(C(=O)C4(N5CCCC5)CCCC4)CC3)c2)n[nH]c(=O)c1C
Aliases
BDBM50309235 (preferred) 6-(4-fluoro-3-(4-(1-(pyrrolidin-1-yl)cyclopentanecarbonyl)piperazine-1-carbonyl)benzyl)-4,5-dimethylpyridazin-3(2H)-one (source_name) BDBM50309235 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50309235 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50309235 Open - 10.1016/j.bmcl.2009.11.087 PMID: 20022747
PubChem CID46230372 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1c(Cc2ccc(F)c(C(=O)N3CCN(C(=O)C4(N5CCCC5)CCCC4)CC3)c2)n[nH]c(=O)c1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB051784/BDB051784.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB051784/BDB051784.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB051784/BDB051784.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB051784/BDB051784.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB051784/BDB051784.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50309235 IC50 2.7 nM Very high DOI: 10.1016/j.bmcl.2009.11.087
PMID: 20022747 		1