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BDBM50309251

E3L051800
Internal ID: BDB051800
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB051800/BDB051800.sdf
Basic Properties
Compound ID
E3L051800
Internal ID
BDB051800
Molecular formula
C30H33F2N5O3
Molecular weight
549.622000
Exact mass
549.255146
XLogP
2.9050
TPSA
98.4000
HBA / HBD
5 / 2
Rotatable bonds
6
Heavy atoms / rings
40 / 5
Activity summary
IC50 unknown 3.60000000 nM
1 activity record(s) imported
InChIKey
HLSPKSKIHXWFRR-UHFFFAOYSA-N
SMILES
Cc1c(Cc2ccc(F)c(C(=O)N3CCN(C(=O)C4(Cc5ccc(F)cc5)CCCN4)CC3)c2)n[nH]c(=O)c1C
Aliases
BDBM50309251 (preferred) 6-(4-fluoro-3-(4-(2-(4-fluorobenzyl)pyrrolidine-2-carbonyl)piperazine-1-carbonyl)benzyl)-4,5-dimethylpyridazin-3(2H)-one (source_name) BDBM50309251 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50309251 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50309251 Open - 10.1016/j.bmcl.2009.11.087 PMID: 20022747
PubChem CID46216801 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1c(Cc2ccc(F)c(C(=O)N3CCN(C(=O)C4(Cc5ccc(F)cc5)CCCN4)CC3)c2)n[nH]c(=O)c1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB051800/BDB051800.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB051800/BDB051800.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB051800/BDB051800.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB051800/BDB051800.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB051800/BDB051800.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50309251 IC50 3.6 nM Very high DOI: 10.1016/j.bmcl.2009.11.087
PMID: 20022747 		1