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BDBM50309367

E3L051823
Internal ID: BDB051823
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB051823/BDB051823.sdf
Basic Properties
Compound ID
E3L051823
Internal ID
BDB051823
Molecular formula
C23H24Cl2FN5O3
Molecular weight
508.381000
Exact mass
507.124023
XLogP
2.5103
TPSA
81.1300
HBA / HBD
4 / 1
Rotatable bonds
5
Heavy atoms / rings
34 / 4
Activity summary
IC50 unknown 2.50000000 nM
1 activity record(s) imported
InChIKey
URRPAFUDRLDWED-UHFFFAOYSA-N
SMILES
CN(C)CC(=O)N1CCN(C(=O)c2cc(Cc3c[nH]c(=O)c4cc(Cl)c(Cl)n34)ccc2F)CC1
Aliases
BDBM50309367 (preferred) 6,7-dichloro-4-(3-(4-(2-(dimethylamino)acetyl)piperazine-1-carbonyl)-4-fluorobenzyl)pyrrolo[1,2-a]pyrazin-1(2H)-one (source_name) BDBM50309367 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50309367 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50309367 Open - 10.1016/j.bmcl.2009.12.026 PMID: 20031401
PubChem CID46230379 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)CC(=O)N1CCN(C(=O)c2cc(Cc3c[nH]c(=O)c4cc(Cl)c(Cl)n34)ccc2F)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB051823/BDB051823.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB051823/BDB051823.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB051823/BDB051823.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB051823/BDB051823.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB051823/BDB051823.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50309367 IC50 2.5 nM Very high DOI: 10.1016/j.bmcl.2009.12.026
PMID: 20031401 		1