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BDBM50309918

E3L051860
Internal ID: BDB051860
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB051860/BDB051860.sdf
Basic Properties
Compound ID
E3L051860
Internal ID
BDB051860
Molecular formula
C14H17N3O2
Molecular weight
259.309000
Exact mass
259.132077
XLogP
0.4933
TPSA
75.4300
HBA / HBD
3 / 2
Rotatable bonds
3
Heavy atoms / rings
19 / 3
Activity summary
EC50 unknown 374.00000000 nM
2 activity record(s) imported
InChIKey
XGTOVXYKFYVZOQ-UHFFFAOYSA-N
SMILES
NC(=O)c1cccc2c1C(=O)N(CC1CCCN1)C2
Aliases
BDBM50309918 (preferred) 3-Oxo-2-(pyrrolidin-2-ylmethyl)isoindoline-4-carboxamide (source_name) BDBM50309918 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50309918 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50309918 Open - 10.1016/j.bmcl.2009.12.042 PMID: 20045315
PubChem CID24937837 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NC(=O)c1cccc2c1C(=O)N(CC1CCCN1)C2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB051860/BDB051860.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB051860/BDB051860.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB051860/BDB051860.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB051860/BDB051860.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB051860/BDB051860.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50309918 EC50 374 nM Moderate DOI: 10.1016/j.bmcl.2009.12.042
PMID: 20045315 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50309918 Ki 377 nM Moderate DOI: 10.1016/j.bmcl.2009.12.042
PMID: 20045315 		1