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BDBM50316240

E3L052302
Internal ID: BDB052302
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB052302/BDB052302.sdf
Basic Properties
Compound ID
E3L052302
Internal ID
BDB052302
Molecular formula
C20H23N5O
Molecular weight
349.438000
Exact mass
349.190260
XLogP
1.8718
TPSA
67.3900
HBA / HBD
4 / 1
Rotatable bonds
4
Heavy atoms / rings
26 / 4
Activity summary
IC50 unknown 31.00000000 nM
1 activity record(s) imported
InChIKey
KBEFMADEMWRMCL-UHFFFAOYSA-N
SMILES
CN1CCN(Cc2ccc(-n3cc4cccc(C(N)=O)c4n3)cc2)CC1
Aliases
BDBM50316240 (preferred) 2-{4-[(4-Methylpiperazin-1-yl)methyl]phenyl}-2H-indazole-7-carboxamide (source_name) BDBM50316240 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50316240 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50316240 Open - 10.1021/jm901188v PMID: 19873981
PubChem CID44549651 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1CCN(Cc2ccc(-n3cc4cccc(C(N)=O)c4n3)cc2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB052302/BDB052302.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB052302/BDB052302.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB052302/BDB052302.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB052302/BDB052302.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB052302/BDB052302.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50316240 IC50 31 nM High DOI: 10.1021/jm901188v
PMID: 19873981 		1