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BDBM50324535

E3L052664
Internal ID: BDB052664
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB052664/BDB052664.sdf
Basic Properties
Compound ID
E3L052664
Internal ID
BDB052664
Molecular formula
C14H28N2O4
Molecular weight
288.388000
Exact mass
288.204907
XLogP
1.9712
TPSA
81.0800
HBA / HBD
4 / 2
Rotatable bonds
12
Heavy atoms / rings
20 / 0
Activity summary
IC50 unknown 13000.00000000 nM
1 activity record(s) imported
InChIKey
SBOZGYUGKHFCFF-UHFFFAOYSA-N
SMILES
CN(C)CCCCCCCCC(=O)N(O)CCC(=O)O
Aliases
BDBM50324535 (preferred) 3-{[9-(Dimethylamino)nonanoyl](hydroxy)amino}propanoicAcid Hydrochloride (source_name) BDBM50324535 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50324535 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50324535 Open - 10.1021/jm400624b PMID: 23964788
PubChem CID46899607 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)CCCCCCCCC(=O)N(O)CCC(=O)O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB052664/BDB052664.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB052664/BDB052664.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB052664/BDB052664.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB052664/BDB052664.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB052664/BDB052664.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50324535 IC50 13000 nM Low DOI: 10.1021/jm400624b
PMID: 23964788 		1