< Back to small molecule database

BDBM50339371

E3L053067
Internal ID: BDB053067
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB053067/BDB053067.sdf
Basic Properties
Compound ID
E3L053067
Internal ID
BDB053067
Molecular formula
C27H23ClN2O5
Molecular weight
490.943000
Exact mass
490.129550
XLogP
5.2014
TPSA
92.9100
HBA / HBD
5 / 1
Rotatable bonds
6
Heavy atoms / rings
35 / 5
Activity summary
IC50 unknown 310.00000000 nM
1 activity record(s) imported
InChIKey
PUIQNHJMZHDIFX-WVJBAYLNSA-N
SMILES
O=C1c2ccccc2C(O[C@@H]2C=C[C@@H](O)CC2)(c2ccc(Cl)cc2)N1Cc1ccc([N+](=O)[O-])cc1
Aliases
BDBM50339371 (preferred) (+/-)-trans-3-(4-Chlorophenyl)-3-(4-hydroxycyclohex-2-enyloxy)-2-(4-nitrobenzyl)-2,3-dihydroisoindol-1-one (source_name) BDBM50339371 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50339371 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50339371 Open - 10.1021/jm1011929 PMID: 21314128
PubChem CID51350653 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1c2ccccc2C(O[C@@H]2C=C[C@@H](O)CC2)(c2ccc(Cl)cc2)N1Cc1ccc([N+](=O)[O-])cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB053067/BDB053067.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB053067/BDB053067.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB053067/BDB053067.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB053067/BDB053067.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB053067/BDB053067.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM50339371 IC50 310 nM Moderate DOI: 10.1021/jm1011929
PMID: 21314128 		1