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BDBM50339410

E3L053105
Internal ID: BDB053105
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB053105/BDB053105.sdf
Basic Properties
Compound ID
E3L053105
Internal ID
BDB053105
Molecular formula
C21H16N2O4
Molecular weight
360.369000
Exact mass
360.111007
XLogP
3.4442
TPSA
83.6800
HBA / HBD
4 / 1
Rotatable bonds
4
Heavy atoms / rings
27 / 4
Activity summary
IC50 unknown 87000.00000000 nM
1 activity record(s) imported
InChIKey
JHLRZXRFMVWOLS-UHFFFAOYSA-N
SMILES
O=C1c2ccccc2C(O)(c2ccccc2)N1Cc1ccc([N+](=O)[O-])cc1
Aliases
BDBM50339410 (preferred) 3-Hydroxy-2-(4-nitrobenzyl)-3-phenyl-2,3-dihydroisoindol-1-one (source_name) BDBM50339410 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50339410 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50339410 Open - 10.1021/jm1011929 PMID: 21314128
PubChem CID51349702 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1c2ccccc2C(O)(c2ccccc2)N1Cc1ccc([N+](=O)[O-])cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB053105/BDB053105.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB053105/BDB053105.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB053105/BDB053105.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB053105/BDB053105.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB053105/BDB053105.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM50339410 IC50 87000 nM Low DOI: 10.1021/jm1011929
PMID: 21314128 		1