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Succinic acid monohydrazide

E3L055036
Internal ID: BDB055036
Activity data available Local docking-ready structure
Dock with P41229
Structure
/e3_file/ligand_db/generated/BDB055036/BDB055036.sdf
Basic Properties
Compound ID
E3L055036
Internal ID
BDB055036
Molecular formula
C4H8N2O3
Molecular weight
132.119000
Exact mass
132.053492
XLogP
-1.1589
TPSA
92.4200
HBA / HBD
3 / 3
Rotatable bonds
3
Heavy atoms / rings
9 / 0
Activity summary
IC50 unknown 480.00000000 nM
1 activity record(s) imported
InChIKey
XRMBRQWBOICYRP-UHFFFAOYSA-N
SMILES
NNC(=O)CCC(=O)O
Aliases
BDBM50395083 (preferred) Succinic acid monohydrazide (source_name) BDBM50395083 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41229 KDM5C;DXS1272E;JARID1C;SMCX;XE169
Lysine-specific demethylase 5C		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50395083 medium
; target=Lysine-specific demethylase 5C
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50395083 Open - 10.1021/jm300677j PMID: 22724510
PubChem CID222878 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NNC(=O)CCC(=O)O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB055036/BDB055036.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB055036/BDB055036.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB055036/BDB055036.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB055036/BDB055036.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB055036/BDB055036.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5C
P41229
E3 ligase component 		BindingDB:BDBM50395083 IC50 480 nM Moderate DOI: 10.1021/jm300677j
PMID: 22724510 		1