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BDBM50428246

E3L055754
Internal ID: BDB055754
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB055754/BDB055754.sdf
Basic Properties
Compound ID
E3L055754
Internal ID
BDB055754
Molecular formula
C20H23ClN4O3
Molecular weight
402.882000
Exact mass
402.145868
XLogP
4.0309
TPSA
78.7200
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
28 / 3
Activity summary
Kd > 20000.00000000 nM
1 activity record(s) imported
InChIKey
VKCPJTGJMTXVTH-UHFFFAOYSA-N
SMILES
CN(C)C1CCN(c2ccc([N+](=O)[O-])cc2NC(=O)c2ccccc2Cl)CC1
Aliases
BDBM50428246 (preferred) 2-chloro-N-[2-[4-(dimethylamino)piperidin-1-yl]-5-nitrophenyl]benzamide (source_name) BDBM50428246 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50428246 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50428246 Open - 10.1021/ml300467n PMID: 24900672
PubChem CID71716466 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)C1CCN(c2ccc([N+](=O)[O-])cc2NC(=O)c2ccccc2Cl)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB055754/BDB055754.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB055754/BDB055754.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB055754/BDB055754.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB055754/BDB055754.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB055754/BDB055754.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50428246 Kd >20000 nM Low DOI: 10.1021/ml300467n
PMID: 24900672 		1