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BDBM50441816

E3L056352

Internal ID: BDB056352

Activity data available Local docking-ready structure

Dock with P98170

Structure

/e3_file/ligand_db/generated/BDB056352/BDB056352.sdf

Basic Properties

Compound ID

E3L056352

Internal ID

BDB056352

Molecular formula

C32H33N5O4

Molecular weight

551.647000

Exact mass

551.253255

XLogP

3.7169

TPSA

117.0000

HBA / HBD

6 / 3

Rotatable bonds

Heavy atoms / rings

41 / 5

Activity summary

IC50 unknown 6.00000000 nM
4 activity record(s) imported

InChIKey

BXNIMYHZUMCTGM-FNZWTVRRSA-N

SMILES

CN[C@@H](C)C(=O)N[C@H]1CN(C(=O)c2ccc(N)cc2)c2ccccc2N(Cc2c(OC)ccc3ccccc23)C1=O

Aliases

BDBM50441816 (preferred) N-{(3s)-5-(4-Aminobenzoyl)-1-[(2-Methoxynaphthalen-1-Yl)methyl]-2-Oxo-2,3,4,5-Tetrahydro-1h-1,5-Benzodiazepin-3-Yl}-N~2~-Methyl-L-Alaninamide (source_name) BDBM50441816 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
P98170	XIAP;API3;BIRC4;IAP3 E3 ubiquitin-protein ligase XIAP	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50441816	medium ; target=E3 ubiquitin-protein ligase XIAP

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM50441816	Open	-	10.7270/Q2W097X3; 10.1021/jm400732v PMID: 24093940
PubChem	CID71819719	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	CN[C@@H](C)C(=O)N[C@H]1CN(C(=O)c2ccc(N)cc2)c2ccccc2N(Cc2c(OC)ccc3ccccc23)C1=O	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB056352/BDB056352.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB056352/BDB056352.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB056352/BDB056352.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB056352/BDB056352.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB056352/BDB056352.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM50441816	IC50	24520 nM	Low	DOI: 10.7270/Q2W097X3	1
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM50441816	IC50	6 nM	Very high	DOI: 10.7270/Q2W097X3	1
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM50441816	IC50	24500 nM	Low	DOI: 10.1021/jm400732v PMID: 24093940	1
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM50441816	IC50	6 nM	Very high	DOI: 10.1021/jm400732v PMID: 24093940	1