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BDBM50460844

E3L057080
Internal ID: BDB057080
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB057080/BDB057080.sdf
Basic Properties
Compound ID
E3L057080
Internal ID
BDB057080
Molecular formula
C21H24F3N3O
Molecular weight
391.437000
Exact mass
391.187147
XLogP
4.7999
TPSA
44.3700
HBA / HBD
2 / 2
Rotatable bonds
4
Heavy atoms / rings
28 / 3
Activity summary
IC50 unknown 16567.00000000 nM
3 activity record(s) imported
InChIKey
LYQSVWZURIPXOS-UHFFFAOYSA-N
SMILES
Cc1ccc(CN2CCC(NC(=O)Nc3cccc(C(F)(F)F)c3)CC2)cc1
Aliases
BDBM50460844 (preferred) 1-[1-[(4-Methylphenyl)methyl]piperidin-4-yl]-3-[3-(trifluoromethyl)phenyl]urea (source_name) BDBM50460844 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50460844 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50460844 Open - 10.1021/acs.jmedchem.7b01277; 10.7270/Q2736V2B PMID: 29547696
PubChem CID126696215 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(CN2CCC(NC(=O)Nc3cccc(C(F)(F)F)c3)CC2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB057080/BDB057080.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB057080/BDB057080.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB057080/BDB057080.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB057080/BDB057080.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB057080/BDB057080.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50460844 IC50 17000 nM Low DOI: 10.7270/Q2736V2B 1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50460844 IC50 16567 nM Low DOI: 10.7270/Q2736V2B 1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50460844 IC50 19000 nM Low DOI: 10.1021/acs.jmedchem.7b01277
PMID: 29547696 		1