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BDBM50465585

E3L057251
Internal ID: BDB057251
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB057251/BDB057251.sdf
Basic Properties
Compound ID
E3L057251
Internal ID
BDB057251
Molecular formula
C23H21Cl2N3O
Molecular weight
426.347000
Exact mass
425.106168
XLogP
5.1493
TPSA
46.9200
HBA / HBD
2 / 1
Rotatable bonds
4
Heavy atoms / rings
29 / 5
Activity summary
Ki unknown 2.50000000 nM
4 activity record(s) imported
InChIKey
HLGZWOPKLXYBFI-HXUWFJFHSA-N
SMILES
O=C(Cc1ccc(Cl)c(Cl)c1)N[C@@H]1CCc2ccc(-c3cn4c(n3)CCC4)cc21
Aliases
BDBM50465585 (preferred) 2-(3,4-dichlorophenyl)-N-[(1R)-6-(6,7-dihydro-5H-pyrrolo[1,2-a]imidazol-2-yl)-2,3-dihydro-1H-inden-1-yl]acetamide (source_name) BDBM50465585 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50465585 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50465585 Open - 10.7270/Q2319Z71; 10.1021/acs.jmedchem.8b00375 PMID: 29889518
PubChem CID138470418 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(Cc1ccc(Cl)c(Cl)c1)N[C@@H]1CCc2ccc(-c3cn4c(n3)CCC4)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB057251/BDB057251.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB057251/BDB057251.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB057251/BDB057251.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB057251/BDB057251.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB057251/BDB057251.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50465585 IC50 9270 nM Low DOI: 10.1021/acs.jmedchem.8b00375
PMID: 29889518 		1
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50465585 Ki 2.66 nM Very high DOI: 10.7270/Q2319Z71 1
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50465585 Ki 2.7 nM Very high DOI: 10.1021/acs.jmedchem.8b00375
PMID: 29889518 		1
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50465585 Ki 2.5 nM Very high DOI: 10.1021/acs.jmedchem.8b00375
PMID: 29889518 		1