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BDBM50465592

E3L057258
Internal ID: BDB057258
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB057258/BDB057258.sdf
Basic Properties
Compound ID
E3L057258
Internal ID
BDB057258
Molecular formula
C25H27N3O3
Molecular weight
417.509000
Exact mass
417.205242
XLogP
4.3662
TPSA
65.3800
HBA / HBD
4 / 1
Rotatable bonds
7
Heavy atoms / rings
31 / 5
Activity summary
Ki unknown 105.00000000 nM
1 activity record(s) imported
InChIKey
VDRHHZQQKHUNMM-UHFFFAOYSA-N
SMILES
COc1cccc(C(=O)NCc2cc(-c3cn4c(n3)CCC4)ccc2OC2CCC2)c1
Aliases
BDBM50465592 (preferred) N-[[2-cyclobutyloxy-5-(6,7-dihydro-5H-pyrrolo[1,2-a]imidazol-2-yl)phenyl]methyl]-3-methoxybenzamide (source_name) BDBM50465592 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50465592 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50465592 Open - 10.1021/acs.jmedchem.8b00375 PMID: 29889518
PubChem CID134364178 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cccc(C(=O)NCc2cc(-c3cn4c(n3)CCC4)ccc2OC2CCC2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB057258/BDB057258.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB057258/BDB057258.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB057258/BDB057258.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB057258/BDB057258.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB057258/BDB057258.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50465592 Ki 105 nM Moderate DOI: 10.1021/acs.jmedchem.8b00375
PMID: 29889518 		1