< Back to small molecule database

BDBM50468636

E3L057425
Internal ID: BDB057425
Activity data available Local docking-ready structure
Dock with P98170
Structure
/e3_file/ligand_db/generated/BDB057425/BDB057425.sdf
Basic Properties
Compound ID
E3L057425
Internal ID
BDB057425
Molecular formula
C16H13ClN2O
Molecular weight
284.746000
Exact mass
284.071641
XLogP
3.9950
TPSA
34.8900
HBA / HBD
2 / 0
Rotatable bonds
1
Heavy atoms / rings
20 / 3
Activity summary
IC50 unknown 4130.00000000 nM
1 activity record(s) imported
InChIKey
UACABVLDFJEHQH-UHFFFAOYSA-N
SMILES
Cc1nn(C(=O)c2ccc3ccccc3c2)c(C)c1Cl
Aliases
BDBM50468636 (preferred) (4-Chloro-3,5-dimethylpyrazol-1-yl)-naphthalen-2-ylmethanone (source_name) BDBM50468636 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P98170 XIAP;API3;BIRC4;IAP3
E3 ubiquitin-protein ligase XIAP
reported_binder bindingdb_reported Yes No low BindingDB:BDBM50468636 medium
; target=E3 ubiquitin-protein ligase XIAP
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50468636 Open - 10.1016/j.ejmech.2018.07.002 PMID: 30015078
PubChem CID145990949 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nn(C(=O)c2ccc3ccccc3c2)c(C)c1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB057425/BDB057425.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB057425/BDB057425.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB057425/BDB057425.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB057425/BDB057425.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB057425/BDB057425.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase XIAP
P98170
E3 ligase component
BindingDB:BDBM50468636 IC50 4130 nM Low DOI: 10.1016/j.ejmech.2018.07.002
PMID: 30015078
1