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BDBM50501868

E3L058048
Internal ID: BDB058048
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB058048/BDB058048.sdf
Basic Properties
Compound ID
E3L058048
Internal ID
BDB058048
Molecular formula
C26H23N5O4
Molecular weight
469.501000
Exact mass
469.175004
XLogP
2.5905
TPSA
127.5100
HBA / HBD
7 / 2
Rotatable bonds
5
Heavy atoms / rings
35 / 5
Activity summary
IC50 unknown 112.00000000 nM
2 activity record(s) imported
InChIKey
PABFQAMQVZLSPS-QNGOZBTKSA-N
SMILES
NC(=O)c1cccc2c1O/C(=C\c1ccc(C(=O)NC3CCN(c4ncccn4)CC3)cc1)C2=O
Aliases
BDBM50501868 (preferred) (2Z)-3-oxo-2-[[4-[(1-pyrimidin-2-ylpiperidin-4-yl)carbamoyl]phenyl]methylidene]-1-benzofuran-7-carboxamide (source_name) BDBM50501868 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50501868 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50501868 Open - 10.1021/acs.jmedchem.8b01709 PMID: 31042381
PubChem CID155536588 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NC(=O)c1cccc2c1O/C(=C\c1ccc(C(=O)NC3CCN(c4ncccn4)CC3)cc1)C2=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB058048/BDB058048.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB058048/BDB058048.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB058048/BDB058048.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB058048/BDB058048.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB058048/BDB058048.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50501868 IC50 112 nM Moderate DOI: 10.1021/acs.jmedchem.8b01709
PMID: 31042381 		2 source records