< Back to small molecule database

BDBM50509828

E3L058405
Internal ID: BDB058405
Activity data available Local docking-ready structure
Dock with P12830
Structure
/e3_file/ligand_db/generated/BDB058405/BDB058405.sdf
Basic Properties
Compound ID
E3L058405
Internal ID
BDB058405
Molecular formula
C37H33ClFN5O8
Molecular weight
730.149000
Exact mass
729.200169
XLogP
4.4025
TPSA
206.7900
HBA / HBD
6 / 7
Rotatable bonds
15
Heavy atoms / rings
52 / 5
Activity summary
Ki unknown 4500.00000000 nM
1 activity record(s) imported
InChIKey
ZJZXRKOOZKAZHS-QMOZSOIISA-N
SMILES
O=C(O)CC[C@H](NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](Cc1ccc2ccccc2c1)NC(=O)c1cc2cc(Cl)ccc2[nH]1)C(=O)Nc1ccc(F)cc1
Aliases
BDBM50509828 (preferred) BDBM50509828 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P12830 CDH1;CDHE;UVO
Cadherin-1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50509828 medium
; target=Catenin beta-1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50509828 Open - 10.7270/Q2F194HS
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(O)CC[C@H](NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](Cc1ccc2ccccc2c1)NC(=O)c1cc2cc(Cl)ccc2[nH]1)C(=O)Nc1ccc(F)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB058405/BDB058405.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB058405/BDB058405.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB058405/BDB058405.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB058405/BDB058405.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB058405/BDB058405.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Catenin beta-1
P12830
E3 ligase component 		BindingDB:BDBM50509828 Ki 4500 nM Low DOI: 10.7270/Q2F194HS 1