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BDBM50511606

E3L058450
Internal ID: BDB058450
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB058450/BDB058450.sdf
Basic Properties
Compound ID
E3L058450
Internal ID
BDB058450
Molecular formula
C19H17ClN6O
Molecular weight
380.839000
Exact mass
380.115237
XLogP
3.5535
TPSA
99.4300
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
27 / 3
Activity summary
IC50 unknown 3400.00000000 nM
3 activity record(s) imported
InChIKey
OBTOXJVNGXNYAV-UHFFFAOYSA-N
SMILES
CCC(C#N)Cn1c(=O)n(C)c2ccc(Nc3ccnc(Cl)c3C#N)cc21
Aliases
BDBM50511606 (preferred) 2-Chloro-4-[[3-(2-cyanobutyl)-1-methyl-2-oxobenzimidazol-5-yl]amino]pyridine-3-carbonitrile (source_name) BDBM50511606 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50511606 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50511606 Open - 10.7270/Q2M049Z0; 10.1021/acs.jmedchem.9b02076 PMID: 32275432
PubChem CID135387021 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(C#N)Cn1c(=O)n(C)c2ccc(Nc3ccnc(Cl)c3C#N)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB058450/BDB058450.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB058450/BDB058450.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB058450/BDB058450.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB058450/BDB058450.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB058450/BDB058450.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM50511606 IC50 4169 nM Low DOI: 10.7270/Q2M049Z0 1
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM50511606 IC50 3548 nM Low DOI: 10.7270/Q2M049Z0 1
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM50511606 IC50 3400 nM Low DOI: 10.1021/acs.jmedchem.9b02076
PMID: 32275432 		1