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BDBM50511633

E3L058471
Internal ID: BDB058471
Activity data available Local docking-ready structure
Dock with P41182
Structure
/e3_file/ligand_db/generated/BDB058471/BDB058471.sdf
Basic Properties
Compound ID
E3L058471
Internal ID
BDB058471
Molecular formula
C15H13N5O
Molecular weight
279.303000
Exact mass
279.112010
XLogP
1.8873
TPSA
75.6400
HBA / HBD
4 / 1
Rotatable bonds
2
Heavy atoms / rings
21 / 3
Activity summary
IC50 unknown 86000.00000000 nM
2 activity record(s) imported
InChIKey
PLONIHFWCNPQPN-UHFFFAOYSA-N
SMILES
Cn1c(=O)n(C)c2cc(Nc3ncccc3C#N)ccc21
Aliases
BDBM50511633 (preferred) 2-[(1,3-Dimethyl-2-oxidanylidene-benzimidazol-5-yl)amino]pyridine-3-carbonitrile (source_name) BDBM50511633 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41182 BCL6;BCL5;LAZ3;ZBTB27;ZNF51
B-cell lymphoma 6 protein		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50511633 medium
; target=B-cell lymphoma 6 protein
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50511633 Open - 10.1021/jm9508853; 10.1021/acs.jmedchem.9b02076 PMID: 8667363; 32275432
PubChem CID72105690 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1c(=O)n(C)c2cc(Nc3ncccc3C#N)ccc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB058471/BDB058471.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB058471/BDB058471.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB058471/BDB058471.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB058471/BDB058471.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB058471/BDB058471.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM50511633 IC50 86000 nM Low DOI: 10.1021/acs.jmedchem.9b02076
PMID: 32275432 		1
B-cell lymphoma 6 protein
P41182
E3 ligase component 		BindingDB:BDBM50511633 IC50 86000 nM Low DOI: 10.1021/jm9508853
PMID: 8667363 		1