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Kdm4-IN-2

E3L058582
Internal ID: BDB058582
Activity data available Local docking-ready structure
Dock with P41229
Structure
/e3_file/ligand_db/generated/BDB058582/BDB058582.sdf
Basic Properties
Compound ID
E3L058582
Internal ID
BDB058582
Molecular formula
C25H26N6O
Molecular weight
426.524000
Exact mass
426.216809
XLogP
3.0263
TPSA
79.7000
HBA / HBD
5 / 1
Rotatable bonds
4
Heavy atoms / rings
32 / 6
Activity summary
IC50 unknown 123.00000000 nM
1 activity record(s) imported
InChIKey
AVFIHINZEZRGBL-UHFFFAOYSA-N
SMILES
O=c1[nH]cnc2c(-n3cc(CCN4CCC5(CCc6ccccc65)CC4)cn3)nccc12
Aliases
BDBM50513343 (preferred) Kdm4-IN-2 (source_name) BDBM50513343 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41229 KDM5C;DXS1272E;JARID1C;SMCX;XE169
Lysine-specific demethylase 5C		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50513343 medium
; target=Lysine-specific demethylase 5C
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50513343 Open - 10.1016/j.ejmech.2019.05.041 PMID: 31158747
PubChem CID138393336 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]cnc2c(-n3cc(CCN4CCC5(CCc6ccccc65)CC4)cn3)nccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB058582/BDB058582.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB058582/BDB058582.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB058582/BDB058582.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB058582/BDB058582.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB058582/BDB058582.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5C
P41229
E3 ligase component 		BindingDB:BDBM50513343 IC50 123 nM Moderate DOI: 10.1016/j.ejmech.2019.05.041
PMID: 31158747 		1