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BDBM50513356

E3L058595
Internal ID: BDB058595
Activity data available Local docking-ready structure
Dock with P41229
Structure
/e3_file/ligand_db/generated/BDB058595/BDB058595.sdf
Basic Properties
Compound ID
E3L058595
Internal ID
BDB058595
Molecular formula
C16H18N6O
Molecular weight
310.361000
Exact mass
310.154209
XLogP
1.3130
TPSA
79.7000
HBA / HBD
5 / 1
Rotatable bonds
2
Heavy atoms / rings
23 / 4
Activity summary
IC50 unknown 163.00000000 nM
1 activity record(s) imported
InChIKey
WDLBUONJQGHSKT-UHFFFAOYSA-N
SMILES
CN1CCC(c2cnn(-c3nccc4c(=O)[nH]cnc34)c2)CC1
Aliases
BDBM50513356 (preferred) 8-[4-(1-methylpiperidin-4-yl)pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one (source_name) BDBM50513356 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41229 KDM5C;DXS1272E;JARID1C;SMCX;XE169
Lysine-specific demethylase 5C		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50513356 medium
; target=Lysine-specific demethylase 5C
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50513356 Open - 10.1016/j.ejmech.2019.05.041 PMID: 31158747
PubChem CID138393333 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1CCC(c2cnn(-c3nccc4c(=O)[nH]cnc34)c2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB058595/BDB058595.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB058595/BDB058595.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB058595/BDB058595.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB058595/BDB058595.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB058595/BDB058595.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5C
P41229
E3 ligase component 		BindingDB:BDBM50513356 IC50 163 nM Moderate DOI: 10.1016/j.ejmech.2019.05.041
PMID: 31158747 		1