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BDBM50520137

E3L059000
Internal ID: BDB059000
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB059000/BDB059000.sdf
Basic Properties
Compound ID
E3L059000
Internal ID
BDB059000
Molecular formula
C27H26F2N4O2
Molecular weight
476.527000
Exact mass
476.202383
XLogP
4.5466
TPSA
72.0400
HBA / HBD
3 / 2
Rotatable bonds
7
Heavy atoms / rings
35 / 4
Activity summary
Kd unknown 0.03500000 nM
1 activity record(s) imported
InChIKey
HJWNICYTTDSUAA-UHFFFAOYSA-N
SMILES
COc1cc(CNC(=O)c2cc(Cn3ccn(C)c3=N)cc(-c3ccc(F)cc3C)c2)ccc1F
Aliases
BDBM50520137 (preferred) N-[(4-fluoro-3-methoxyphenyl)methyl]-3-(4-fluoro-2-methylphenyl)-5-[(2-imino-3-methylimidazol-1-yl)methyl]benzamide (source_name) BDBM50520137 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50520137 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50520137 Open - 10.1021/acs.jmedchem.9b01608 PMID: 31858797
PubChem CID155513664 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(CNC(=O)c2cc(Cn3ccn(C)c3=N)cc(-c3ccc(F)cc3C)c2)ccc1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059000/BDB059000.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059000/BDB059000.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059000/BDB059000.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059000/BDB059000.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059000/BDB059000.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50520137 Kd 0.035 nM Very high DOI: 10.1021/acs.jmedchem.9b01608
PMID: 31858797 		1