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BDBM50520140

E3L059003
Internal ID: BDB059003
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB059003/BDB059003.sdf
Basic Properties
Compound ID
E3L059003
Internal ID
BDB059003
Molecular formula
C27H26ClFN4O
Molecular weight
476.983000
Exact mass
476.177917
XLogP
5.3607
TPSA
62.8100
HBA / HBD
2 / 2
Rotatable bonds
6
Heavy atoms / rings
34 / 4
Activity summary
Kd unknown 0.09000000 nM
1 activity record(s) imported
InChIKey
IARSEIRVTAVNDY-UHFFFAOYSA-N
SMILES
Cc1cc(CNC(=O)c2cc(Cn3ccn(C)c3=N)cc(-c3ccc(F)cc3C)c2)ccc1Cl
Aliases
BDBM50520140 (preferred) N-[(4-chloro-3-methylphenyl)methyl]-3-(4-fluoro-2-methylphenyl)-5-[(2-imino-3-methylimidazol-1-yl)methyl]benzamide (source_name) BDBM50520140 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50520140 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50520140 Open - 10.1021/acs.jmedchem.9b01608 PMID: 31858797
PubChem CID146456000 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(CNC(=O)c2cc(Cn3ccn(C)c3=N)cc(-c3ccc(F)cc3C)c2)ccc1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059003/BDB059003.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059003/BDB059003.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059003/BDB059003.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059003/BDB059003.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059003/BDB059003.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50520140 Kd 0.09 nM Very high DOI: 10.1021/acs.jmedchem.9b01608
PMID: 31858797 		1