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BDBM50523636

E3L059122
Internal ID: BDB059122
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB059122/BDB059122.sdf
Basic Properties
Compound ID
E3L059122
Internal ID
BDB059122
Molecular formula
C18H18F2N4O3
Molecular weight
376.363000
Exact mass
376.134697
XLogP
1.3081
TPSA
117.4200
HBA / HBD
6 / 4
Rotatable bonds
3
Heavy atoms / rings
27 / 4
Activity summary
IC50 unknown 2.00000000 nM
1 activity record(s) imported
InChIKey
DNDCXYZRSRFLRY-YBUXEROVSA-N
SMILES
Nc1ncnc2c1ccn2[C@@H]1C[C@H]([C@H](O)c2ccc(F)c(F)c2)[C@@H](O)[C@H]1O
Aliases
BDBM50523636 (preferred) (1R,2S,3R,5R)-3-(4-aminopyrrolo[2,3-d]pyrimidin-7-yl)-5-[(S)-(3,4-difluorophenyl)-hydroxymethyl]cyclopentane-1,2-diol (source_name) BDBM50523636 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50523636 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50523636 Open - 10.1016/j.bmcl.2019.03.042 PMID: 30956011
PubChem CID155175384 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Nc1ncnc2c1ccn2[C@@H]1C[C@H]([C@H](O)c2ccc(F)c(F)c2)[C@@H](O)[C@H]1O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059122/BDB059122.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059122/BDB059122.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059122/BDB059122.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059122/BDB059122.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059122/BDB059122.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM50523636 IC50 2 nM Very high DOI: 10.1016/j.bmcl.2019.03.042
PMID: 30956011 		1