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BDBM50525311

E3L059166
Internal ID: BDB059166
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB059166/BDB059166.sdf
Basic Properties
Compound ID
E3L059166
Internal ID
BDB059166
Molecular formula
C19H17N7O3S2
Molecular weight
455.525000
Exact mass
455.083429
XLogP
2.4411
TPSA
120.8600
HBA / HBD
11 / 0
Rotatable bonds
8
Heavy atoms / rings
31 / 3
Activity summary
IC50 unknown 0.25000000 nM
3 activity record(s) imported
InChIKey
PIZKDKNIAMFREC-UHFFFAOYSA-N
SMILES
C#CCSc1nc(Sc2nnnn2C)c(C#N)c(-c2cc(OC)c(OC)c(OC)c2)n1
Aliases
BDBM50525311 (preferred) 4-(1-Methyltetrazol-5-yl)sulfanyl-2-prop-2-ynylsulfanyl-6-(3,4,5-trimethoxyphenyl)pyrimidine-5-carbonitrile (source_name) BDBM50525311 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50525311 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50525311 Open - 10.1021/acs.jmedchem.9b00003; 10.1021/acs.jmedchem.1c01207 PMID: 31157974; 34939411
PubChem CID155519438 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C#CCSc1nc(Sc2nnnn2C)c(C#N)c(-c2cc(OC)c(OC)c(OC)c2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059166/BDB059166.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059166/BDB059166.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059166/BDB059166.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059166/BDB059166.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059166/BDB059166.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50525311 IC50 0.25 nM Very high DOI: 10.1021/acs.jmedchem.1c01207
PMID: 34939411 		1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50525311 IC50 250 nM Moderate DOI: 10.1021/acs.jmedchem.9b00003
PMID: 31157974 		1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50525311 IC50 360 nM Moderate DOI: 10.1021/acs.jmedchem.9b00003
PMID: 31157974 		1