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BDBM50525318

E3L059173
Internal ID: BDB059173
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB059173/BDB059173.sdf
Basic Properties
Compound ID
E3L059173
Internal ID
BDB059173
Molecular formula
C18H12N8S2
Molecular weight
404.484000
Exact mass
404.062634
XLogP
2.8966
TPSA
108.9600
HBA / HBD
8 / 1
Rotatable bonds
5
Heavy atoms / rings
28 / 4
Activity summary
IC50 > 10000.00000000 nM
2 activity record(s) imported
InChIKey
OUJKCFKEJCWODX-UHFFFAOYSA-N
SMILES
C#CCSc1nc(Sc2nnnn2C)c(C#N)c(-c2c[nH]c3ccccc23)n1
Aliases
BDBM50525318 (preferred) 4-(1H-indol-3-yl)-6-(1-methyltetrazol-5-yl)sulfanyl-2-prop-2-ynylsulfanylpyrimidine-5-carbonitrile (source_name) BDBM50525318 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50525318 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50525318 Open - 10.1021/acs.jmedchem.9b00003 PMID: 31157974
PubChem CID155528789 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C#CCSc1nc(Sc2nnnn2C)c(C#N)c(-c2c[nH]c3ccccc23)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059173/BDB059173.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059173/BDB059173.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059173/BDB059173.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059173/BDB059173.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059173/BDB059173.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50525318 IC50 >10000 nM Low DOI: 10.1021/acs.jmedchem.9b00003
PMID: 31157974 		1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50525318 IC50 >20000 nM Low DOI: 10.1021/acs.jmedchem.9b00003
PMID: 31157974 		1