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BDBM50525349

E3L059204
Internal ID: BDB059204
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB059204/BDB059204.sdf
Basic Properties
Compound ID
E3L059204
Internal ID
BDB059204
Molecular formula
C15H9N5S3
Molecular weight
355.473000
Exact mass
355.002008
XLogP
3.6764
TPSA
78.2500
HBA / HBD
7 / 1
Rotatable bonds
5
Heavy atoms / rings
23 / 3
Activity summary
IC50 > 10000.00000000 nM
2 activity record(s) imported
InChIKey
WWCCGKKTOBFZIJ-UHFFFAOYSA-N
SMILES
C#CCSc1nc(Sc2nccs2)c(C#N)c(-c2ccc[nH]2)n1
Aliases
BDBM50525349 (preferred) 2-prop-2-ynylsulfanyl-4-(1H-pyrrol-2-yl)-6-(1,3-thiazol-2-ylsulfanyl)pyrimidine-5-carbonitrile (source_name) BDBM50525349 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50525349 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50525349 Open - 10.1021/acs.jmedchem.9b00003 PMID: 31157974
PubChem CID155566347 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C#CCSc1nc(Sc2nccs2)c(C#N)c(-c2ccc[nH]2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059204/BDB059204.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059204/BDB059204.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059204/BDB059204.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059204/BDB059204.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059204/BDB059204.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50525349 IC50 >10000 nM Low DOI: 10.1021/acs.jmedchem.9b00003
PMID: 31157974 		1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50525349 IC50 >20000 nM Low DOI: 10.1021/acs.jmedchem.9b00003
PMID: 31157974 		1