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BDBM50529902

E3L059492
Internal ID: BDB059492
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB059492/BDB059492.sdf
Basic Properties
Compound ID
E3L059492
Internal ID
BDB059492
Molecular formula
C30H34N4O3
Molecular weight
498.627000
Exact mass
498.263091
XLogP
3.0576
TPSA
76.1200
HBA / HBD
5 / 2
Rotatable bonds
7
Heavy atoms / rings
37 / 5
Activity summary
IC50 unknown 17.00000000 nM
2 activity record(s) imported
InChIKey
DUQHYFJHWKPYMW-UHFFFAOYSA-N
SMILES
CN(C)c1ccc(C(=O)N2Cc3ccc(C(=O)NCC(O)CN4CCc5ccccc5C4)cc3C2)cc1
Aliases
BDBM50529902 (preferred) N-[3-(3,4-dihydro-1H-isoquinolin-2-yl)-2-hydroxypropyl]-2-[4-(dimethylamino)benzoyl]-1,3-dihydroisoindole-5-carboxamide (source_name) BDBM50529902 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50529902 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50529902 Open - 10.1016/j.ejmech.2018.12.065 PMID: 30605830
PubChem CID147432600 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)c1ccc(C(=O)N2Cc3ccc(C(=O)NCC(O)CN4CCc5ccccc5C4)cc3C2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059492/BDB059492.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059492/BDB059492.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059492/BDB059492.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059492/BDB059492.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059492/BDB059492.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM50529902 IC50 17 nM High DOI: 10.1016/j.ejmech.2018.12.065
PMID: 30605830 		2 source records