< Back to small molecule database

BDBM50532927

E3L059640
Internal ID: BDB059640
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB059640/BDB059640.sdf
Basic Properties
Compound ID
E3L059640
Internal ID
BDB059640
Molecular formula
C13H14N4O
Molecular weight
242.282000
Exact mass
242.116761
XLogP
2.0508
TPSA
73.9500
HBA / HBD
3 / 1
Rotatable bonds
2
Heavy atoms / rings
18 / 2
Activity summary
IC50 unknown 24.00000000 nM
2 activity record(s) imported
InChIKey
WOSBSWHUUKBRPZ-SNAWJCMRSA-N
SMILES
C/C=C/c1[nH]c2c(C#N)cnn2c(=O)c1C(C)C
Aliases
BDBM50532927 (preferred) BDBM50532927 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50532927 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50532927 Open - 10.1016/j.bmcl.2016.06.078 PMID: 27406798
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C/C=C/c1[nH]c2c(C#N)cnn2c(=O)c1C(C)C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059640/BDB059640.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059640/BDB059640.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059640/BDB059640.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059640/BDB059640.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059640/BDB059640.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50532927 IC50 24 nM High DOI: 10.1016/j.bmcl.2016.06.078
PMID: 27406798 		2 source records