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BDBM50532962

E3L059675
Internal ID: BDB059675
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB059675/BDB059675.sdf
Basic Properties
Compound ID
E3L059675
Internal ID
BDB059675
Molecular formula
C16H16N6O
Molecular weight
308.345000
Exact mass
308.138559
XLogP
2.2161
TPSA
91.7700
HBA / HBD
4 / 1
Rotatable bonds
3
Heavy atoms / rings
23 / 4
Activity summary
IC50 unknown 7.90000000 nM
2 activity record(s) imported
InChIKey
HVWZVXNIDTTWSM-UHFFFAOYSA-N
SMILES
CC(C)c1c(-c2cnn(C3CC3)c2)[nH]c2c(C#N)cnn2c1=O
Aliases
BDBM50532962 (preferred) BDBM50532962 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50532962 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50532962 Open - 10.1016/j.bmcl.2016.06.078 PMID: 27406798
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)c1c(-c2cnn(C3CC3)c2)[nH]c2c(C#N)cnn2c1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059675/BDB059675.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059675/BDB059675.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059675/BDB059675.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059675/BDB059675.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059675/BDB059675.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50532962 IC50 7.9 nM Very high DOI: 10.1016/j.bmcl.2016.06.078
PMID: 27406798 		2 source records