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BDBM50539915

E3L059888
Internal ID: BDB059888
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB059888/BDB059888.sdf
Basic Properties
Compound ID
E3L059888
Internal ID
BDB059888
Molecular formula
C24H30N4O3S2
Molecular weight
486.663000
Exact mass
486.175933
XLogP
4.5030
TPSA
83.5600
HBA / HBD
7 / 2
Rotatable bonds
8
Heavy atoms / rings
33 / 4
Activity summary
IC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
XPTUNGFRXJHQJG-HXUWFJFHSA-N
SMILES
C=CC(=O)Nc1ccc(C(=O)N2CCC[C@@H](Nc3ncc(SCC4CCOCC4)s3)C2)cc1
Aliases
BDBM50539915 (preferred) N-[4-[(3R)-3-[[5-(oxan-4-ylmethylsulfanyl)-1,3-thiazol-2-yl]amino]piperidine-1-carbonyl]phenyl]prop-2-enamide (source_name) BDBM50539915 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50539915 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50539915 Open - 10.1021/acs.jmedchem.9b01929 PMID: 32502343
PubChem CID145749966 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C=CC(=O)Nc1ccc(C(=O)N2CCC[C@@H](Nc3ncc(SCC4CCOCC4)s3)C2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059888/BDB059888.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059888/BDB059888.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059888/BDB059888.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059888/BDB059888.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059888/BDB059888.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component 		BindingDB:BDBM50539915 IC50 >10000 nM Low DOI: 10.1021/acs.jmedchem.9b01929
PMID: 32502343 		1