< Back to small molecule database

BDBM50540017

E3L059919
Internal ID: BDB059919
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB059919/BDB059919.sdf
Basic Properties
Compound ID
E3L059919
Internal ID
BDB059919
Molecular formula
C23H19F4N5O3S
Molecular weight
521.496000
Exact mass
521.114473
XLogP
4.2081
TPSA
98.4800
HBA / HBD
7 / 1
Rotatable bonds
5
Heavy atoms / rings
36 / 5
Activity summary
IC50 unknown 0.40000000 nM
1 activity record(s) imported
InChIKey
RSVVZURLVKMPCP-UHFFFAOYSA-N
SMILES
Cc1nc(C(F)(F)F)ccc1-c1cnc(NCc2c(F)ccc3c2CCO3)n2cnc(S(C)(=O)=O)c12
Aliases
BDBM50540017 (preferred) N-[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]-1-methylsulfonyl-8-[2-methyl-6-(trifluoromethyl)-3-pyridinyl]imidazo[1,5-c]pyrimidin-5-amine (source_name) BDBM50540017 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50540017 medium
; target=Polycomb protein EED
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50540017 Open - 10.1021/acs.jmedchem.0c00479 PMID: 32580550
PubChem CID156017861 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc(C(F)(F)F)ccc1-c1cnc(NCc2c(F)ccc3c2CCO3)n2cnc(S(C)(=O)=O)c12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059919/BDB059919.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059919/BDB059919.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059919/BDB059919.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059919/BDB059919.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059919/BDB059919.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50540017 IC50 0.4 nM Very high DOI: 10.1021/acs.jmedchem.0c00479
PMID: 32580550 		1