< Back to small molecule database

BDBM50540024

E3L059926
Internal ID: BDB059926
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB059926/BDB059926.sdf
Basic Properties
Compound ID
E3L059926
Internal ID
BDB059926
Molecular formula
C24H28FN5O5S2
Molecular weight
549.650000
Exact mass
549.151589
XLogP
2.4905
TPSA
122.9700
HBA / HBD
8 / 1
Rotatable bonds
7
Heavy atoms / rings
37 / 6
Activity summary
IC50 unknown 3.10000000 nM
1 activity record(s) imported
InChIKey
DGCKJUCCYLHLFT-UHFFFAOYSA-N
SMILES
CS(=O)(=O)c1ncn2c(NCc3c(F)ccc4c3CCO4)ncc(C3CCN(S(=O)(=O)C4CC4)CC3)c12
Aliases
BDBM50540024 (preferred) 8-(1-cyclopropylsulfonylpiperidin-4-yl)-N-[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]-1-methylsulfonylimidazo[1,5-c]pyrimidin-5-amine (source_name) BDBM50540024 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50540024 medium
; target=Polycomb protein EED
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50540024 Open - 10.1021/acs.jmedchem.0c00479 PMID: 32580550
PubChem CID156013821 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CS(=O)(=O)c1ncn2c(NCc3c(F)ccc4c3CCO4)ncc(C3CCN(S(=O)(=O)C4CC4)CC3)c12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB059926/BDB059926.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB059926/BDB059926.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB059926/BDB059926.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB059926/BDB059926.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB059926/BDB059926.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50540024 IC50 3.1 nM Very high DOI: 10.1021/acs.jmedchem.0c00479
PMID: 32580550 		1