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BDBM50543449

E3L060019
Internal ID: BDB060019
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB060019/BDB060019.sdf
Basic Properties
Compound ID
E3L060019
Internal ID
BDB060019
Molecular formula
C21H27N3O3
Molecular weight
369.465000
Exact mass
369.205242
XLogP
2.0085
TPSA
88.1500
HBA / HBD
5 / 2
Rotatable bonds
3
Heavy atoms / rings
27 / 6
Activity summary
EC50 unknown 220.00000000 nM
1 activity record(s) imported
InChIKey
NYXCEDBEACLWMP-SCJBTZFISA-N
SMILES
COc1ccc([C@@]2(C34CC5CC(CC(O)(C5)C3)C4)N=C(N)N(C)C2=O)cc1
Aliases
BDBM50543449 (preferred) (5R)-2-amino-5-(3-hydroxy-1-adamantyl)-5-(4-methoxyphenyl)-3-methylimidazol-4-one (source_name) BDBM50543449 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50543449 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50543449 Open - 10.1021/acsmedchemlett.9b00525 PMID: 32944135
PubChem CID156017469 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc([C@@]2(C34CC5CC(CC(O)(C5)C3)C4)N=C(N)N(C)C2=O)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB060019/BDB060019.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB060019/BDB060019.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB060019/BDB060019.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB060019/BDB060019.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB060019/BDB060019.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM50543449 EC50 220 nM Moderate DOI: 10.1021/acsmedchemlett.9b00525
PMID: 32944135 		1