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BDBM50545877

E3L060072
Internal ID: BDB060072
Activity data available Local docking-ready structure
Dock with P37231 Dock with Q07869
Structure
/e3_file/ligand_db/generated/BDB060072/BDB060072.sdf
Basic Properties
Compound ID
E3L060072
Internal ID
BDB060072
Molecular formula
C21H17N3O4
Molecular weight
375.384000
Exact mass
375.121906
XLogP
4.0378
TPSA
86.4700
HBA / HBD
5 / 1
Rotatable bonds
6
Heavy atoms / rings
28 / 4
Activity summary
EC50 unknown 6831.00000000 nM
2 activity record(s) imported
InChIKey
QINVEDAVMNJBEJ-UHFFFAOYSA-N
SMILES
Cn1c(COc2cccc(C(=O)O)c2)nc2ccc(Oc3cccnc3)cc21
Aliases
BDBM50545877 (preferred) 3-{[1-Methyl-6-(pyridin-3-yloxy)-1H-benzimidazol-2-yl]methoxy}benzoic acid (source_name) BDBM50545877 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P37231 PPARG;NR1C3
Peroxisome proliferator-activated receptor gamma		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50545877 medium
; target=Peroxisome proliferator-activated receptor gamma
Q07869 PPARA;NR1C1;PPAR
Peroxisome proliferator-activated receptor alpha		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50545877 medium
; target=Peroxisome proliferator-activated receptor alpha
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50545877 Open - 10.1021/acsmedchemlett.8b00645 PMID: 30891140
PubChem CID56933240 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1c(COc2cccc(C(=O)O)c2)nc2ccc(Oc3cccnc3)cc21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB060072/BDB060072.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB060072/BDB060072.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB060072/BDB060072.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB060072/BDB060072.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB060072/BDB060072.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Peroxisome proliferator-activated receptor alpha
Q07869
E3 ligase component 		BindingDB:BDBM50545877 EC50 >10000 nM Low DOI: 10.1021/acsmedchemlett.8b00645
PMID: 30891140 		1
Peroxisome proliferator-activated receptor gamma
P37231
E3 ligase component 		BindingDB:BDBM50545877 EC50 6831 nM Low DOI: 10.1021/acsmedchemlett.8b00645
PMID: 30891140 		1