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BDBM50548684

E3L060332
Internal ID: BDB060332
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB060332/BDB060332.sdf
Basic Properties
Compound ID
E3L060332
Internal ID
BDB060332
Molecular formula
C23H22N6O
Molecular weight
398.470000
Exact mass
398.185509
XLogP
2.5578
TPSA
88.9100
HBA / HBD
6 / 1
Rotatable bonds
3
Heavy atoms / rings
30 / 5
Activity summary
IC50 unknown 1.00000000 nM
1 activity record(s) imported
InChIKey
OQXRCISZYORQBS-GOSISDBHSA-N
SMILES
N#Cc1ccc(N2CCN([C@H]3C=C(c4cc5ncccc5c(=O)[nH]4)CC3)CC2)nc1
Aliases
BDBM50548684 (preferred) 6-[4-[(1R)-3-(5-oxo-6H-1,6-naphthyridin-7-yl)cyclopent-2-en-1-yl]piperazin-1-yl]pyridine-3-carbonitrile (source_name) BDBM50548684 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50548684 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50548684 Open - 10.1016/j.bmc.2020.115819 PMID: 33120078
PubChem CID126602483 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready N#Cc1ccc(N2CCN([C@H]3C=C(c4cc5ncccc5c(=O)[nH]4)CC3)CC2)nc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB060332/BDB060332.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB060332/BDB060332.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB060332/BDB060332.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB060332/BDB060332.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB060332/BDB060332.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50548684 IC50 1 nM Very high DOI: 10.1016/j.bmc.2020.115819
PMID: 33120078 		1