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BDBM50563659

E3L060695
Internal ID: BDB060695
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB060695/BDB060695.sdf
Basic Properties
Compound ID
E3L060695
Internal ID
BDB060695
Molecular formula
C20H18FN7O
Molecular weight
391.410000
Exact mass
391.155686
XLogP
2.7630
TPSA
103.2500
HBA / HBD
7 / 2
Rotatable bonds
4
Heavy atoms / rings
29 / 5
Activity summary
Kd unknown 0.50000000 nM
4 activity record(s) imported
InChIKey
ZNWQTGPXZCEXRZ-UHFFFAOYSA-N
SMILES
Cc1ncccc1-c1cnc(NCc2c(F)cc(N)c3c2CCO3)n2cnnc12
Aliases
BDBM50563659 (preferred) N-[(7-amino-5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]-8-(2-methyl-3-pyridinyl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine (source_name) BDBM50563659 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50563659 medium
; target=Polycomb protein EED
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50563659 Open - 10.1016/j.ejmech.2023.115101; 10.1016/j.bmcl.2021.127904; 10.7270/Q2DN4921 PMID: 36724635; 33684441; 35093670
PubChem CID162658383 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ncccc1-c1cnc(NCc2c(F)cc(N)c3c2CCO3)n2cnnc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB060695/BDB060695.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB060695/BDB060695.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB060695/BDB060695.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB060695/BDB060695.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB060695/BDB060695.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50563659 IC50 50 nM High DOI: 10.1016/j.ejmech.2023.115101
PMID: 36724635 		1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50563659 Kd 0.5 nM Very high DOI: 10.7270/Q2DN4921
PMID: 35093670 		1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50563659 Kd 500 nM Moderate DOI: 10.1016/j.bmcl.2021.127904
PMID: 33684441 		1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50563659 Kd 0.5 nM Very high DOI: 10.1016/j.ejmech.2023.115101
PMID: 36724635 		1