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BDBM50569152

E3L060799
Internal ID: BDB060799
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB060799/BDB060799.sdf
Basic Properties
Compound ID
E3L060799
Internal ID
BDB060799
Molecular formula
C23H19F3N4O4
Molecular weight
472.423000
Exact mass
472.135840
XLogP
4.4487
TPSA
110.3000
HBA / HBD
6 / 2
Rotatable bonds
3
Heavy atoms / rings
34 / 5
Activity summary
Ki unknown 1490.00000000 nM
1 activity record(s) imported
InChIKey
OMDXGAAAXFILOG-IMLKGASGSA-N
SMILES
Cc1ccc([C@H]2[C@H](C(F)(F)F)N[C@@]3(C(=O)Nc4ccccc43)[C@@H]2c2onc(C)c2[N+](=O)[O-])cc1
Aliases
BDBM50569152 (preferred) (3S,3'R,4'S,5'R)-3'-(3-methyl-4-nitro-1,2-oxazol-5-yl)-4'-(4-methylphenyl)-5'-(trifluoromethyl)spiro[1H-indole-3,2'-pyrrolidine]-2-one (source_name) BDBM50569152 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50569152 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50569152 Open - 10.1016/j.ejmech.2021.113359 PMID: 33725632
PubChem CID164618024 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc([C@H]2[C@H](C(F)(F)F)N[C@@]3(C(=O)Nc4ccccc43)[C@@H]2c2onc(C)c2[N+](=O)[O-])cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB060799/BDB060799.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB060799/BDB060799.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB060799/BDB060799.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB060799/BDB060799.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB060799/BDB060799.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM50569152 Ki 1490 nM Low DOI: 10.1016/j.ejmech.2021.113359
PMID: 33725632 		1