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BDBM50573353

E3L061089
Internal ID: BDB061089
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB061089/BDB061089.sdf
Basic Properties
Compound ID
E3L061089
Internal ID
BDB061089
Molecular formula
C27H24F4N6O2
Molecular weight
540.521000
Exact mass
540.189687
XLogP
3.6505
TPSA
82.4200
HBA / HBD
7 / 1
Rotatable bonds
3
Heavy atoms / rings
39 / 7
Activity summary
IC50 unknown 0.80000000 nM
1 activity record(s) imported
InChIKey
PFMXXKQHVWPAGY-UHFFFAOYSA-N
SMILES
O=C1C2N=CN3C(NCc4c(F)ccc5c4CCO5)=NC=C(c4cnc(C(F)(F)F)cc4CN1C1CCC1)C23
Aliases
BDBM50573353 (preferred) BDBM50573353 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50573353 medium
; target=Polycomb protein EED
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50573353 Open - 10.1021/acs.jmedchem.1c01059 PMID: 34613724
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1C2N=CN3C(NCc4c(F)ccc5c4CCO5)=NC=C(c4cnc(C(F)(F)F)cc4CN1C1CCC1)C23 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB061089/BDB061089.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB061089/BDB061089.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB061089/BDB061089.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB061089/BDB061089.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB061089/BDB061089.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50573353 IC50 0.8 nM Very high DOI: 10.1021/acs.jmedchem.1c01059
PMID: 34613724 		1