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BDBM50581589

E3L061395
Internal ID: BDB061395
Activity data available Local docking-ready structure
Dock with P40337
Structure
/e3_file/ligand_db/generated/BDB061395/BDB061395.sdf
Basic Properties
Compound ID
E3L061395
Internal ID
BDB061395
Molecular formula
C39H53N5O8S
Molecular weight
751.947000
Exact mass
751.361485
XLogP
3.0262
TPSA
168.4200
HBA / HBD
10 / 4
Rotatable bonds
20
Heavy atoms / rings
53 / 4
Activity summary
Kd unknown 138.00000000 nM
1 activity record(s) imported
InChIKey
VOMGDZRZNVKQGQ-FFTPJAJHSA-N
SMILES
Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)CCOCCOCCOCCNC(=O)Cc2ccccc2)C(C)(C)C)cc1
Aliases
BDBM50581589 (preferred) BDBM50581589 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P40337 VHL
von Hippel-Lindau disease tumor suppressor		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50581589 medium
; target=von Hippel-Lindau disease tumor suppressor
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50581589 Open - 10.1021/acs.jmedchem.1c01496 PMID: 34881891
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)CCOCCOCCOCCNC(=O)Cc2ccccc2)C(C)(C)C)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB061395/BDB061395.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB061395/BDB061395.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB061395/BDB061395.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB061395/BDB061395.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB061395/BDB061395.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
von Hippel-Lindau disease tumor suppressor
P40337
E3 ligase component 		BindingDB:BDBM50581589 Kd 138 nM Moderate DOI: 10.1021/acs.jmedchem.1c01496
PMID: 34881891 		1