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BDBM50583838

E3L061504

Internal ID: BDB061504

Activity data available Local docking-ready structure

Dock with P00748

Structure

/e3_file/ligand_db/generated/BDB061504/BDB061504.sdf

Basic Properties

Compound ID

E3L061504

Internal ID

BDB061504

Molecular formula

C66H102N24O18S

Molecular weight

1551.759000

Exact mass

1550.752463

XLogP

-6.6561

TPSA

695.8900

HBA / HBD

22 / 24

Rotatable bonds

Heavy atoms / rings

109 / 4

Activity summary

IC50 unknown 90000.00000000 nM
1 activity record(s) imported

InChIKey

RJBONHYCDVNGMW-CIRMSXBNSA-N

SMILES

CC(C)C[C@@H]1NC(=O)[C@H](Cc2ccc(O)c([N+](=O)[O-])c2)NC(=O)CSC[C@@H](C(N)=O)NC(=O)CNC(=O)CNC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](CCCCN)NC(=O)[C@@H]2CCCN2C(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCCNC(=N)N)NC1=O

Aliases

BDBM50583838 (preferred) Ac(1)-Tyr(3-NO2)-Leu-Arg-Phe-Arg-Pro-Lys-Asp-Arg-Gly-Gly-Cys(1)-NH2 (source_name) BDBM50583838 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
P00748	F12 Coagulation factor XII	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50583838	medium ; target=Coagulation factor XII

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM50583838	Open	-	10.1021/acs.jmedchem.1c00651 PMID: 34044534
PubChem	CID166634677	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Reference	CC(C)C[C@@H]1NC(=O)[C@H](Cc2ccc(O)c([N+](=O)[O-])c2)NC(=O)CSC[C@@H](C(N)=O)NC(=O)CNC(=O)CNC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](CCCCN)NC(=O)[C@@H]2CCCN2C(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCCNC(=N)N)NC1=O	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB061504/BDB061504.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB061504/BDB061504.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB061504/BDB061504.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB061504/BDB061504.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB061504/BDB061504.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
Coagulation factor XII P00748 E3 ligase component	BindingDB:BDBM50583838	IC50	90000 nM	Low	DOI: 10.1021/acs.jmedchem.1c00651 PMID: 34044534	1