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BDBM50584136

E3L061546
Internal ID: BDB061546
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB061546/BDB061546.sdf
Basic Properties
Compound ID
E3L061546
Internal ID
BDB061546
Molecular formula
C24H26N4O3S3
Molecular weight
514.698000
Exact mass
514.116704
XLogP
6.3212
TPSA
90.1500
HBA / HBD
10 / 0
Rotatable bonds
9
Heavy atoms / rings
34 / 4
Activity summary
IC50 unknown 611.00000000 nM
1 activity record(s) imported
InChIKey
MPBXPZHWLJAEQA-UHFFFAOYSA-N
SMILES
COc1cc(-c2nc(SCC3CCCCC3)nc(Sc3nccs3)c2C#N)cc(OC)c1OC
Aliases
BDBM50584136 (preferred) 2-(Cyclohexylmethylsulfanyl)-4-(1,3-thiazol-2-ylsulfanyl)-6-(3,4,5-trimethoxyphenyl)pyrimidine-5-carbonitrile (source_name) BDBM50584136 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50584136 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50584136 Open - 10.1021/acs.jmedchem.1c01207 PMID: 34939411
PubChem CID166633933 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(-c2nc(SCC3CCCCC3)nc(Sc3nccs3)c2C#N)cc(OC)c1OC keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB061546/BDB061546.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB061546/BDB061546.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB061546/BDB061546.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB061546/BDB061546.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB061546/BDB061546.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50584136 IC50 611 nM Moderate DOI: 10.1021/acs.jmedchem.1c01207
PMID: 34939411 		1