< Back to small molecule database

BDBM50584152

E3L061562
Internal ID: BDB061562
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB061562/BDB061562.sdf
Basic Properties
Compound ID
E3L061562
Internal ID
BDB061562
Molecular formula
C28H33N5O4S
Molecular weight
535.670000
Exact mass
535.225326
XLogP
4.8136
TPSA
101.7600
HBA / HBD
10 / 1
Rotatable bonds
10
Heavy atoms / rings
38 / 4
Activity summary
IC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
CPMCCGVHGWGXNB-UHFFFAOYSA-N
SMILES
COc1cc(-c2nc(SCc3ccccc3)nc(NC(C)(C)N3CCOCC3)c2C#N)cc(OC)c1OC
Aliases
BDBM50584152 (preferred) 2-Benzylsulfanyl-4-(2-morpholin-4-ylpropan-2-ylamino)-6-(3,4,5-trimethoxyphenyl)pyrimidine-5-carbonitrile (source_name) BDBM50584152 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50584152 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50584152 Open - 10.1021/acs.jmedchem.1c01207 PMID: 34939411
PubChem CID166633381 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(-c2nc(SCc3ccccc3)nc(NC(C)(C)N3CCOCC3)c2C#N)cc(OC)c1OC keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB061562/BDB061562.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB061562/BDB061562.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB061562/BDB061562.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB061562/BDB061562.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB061562/BDB061562.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50584152 IC50 >10000 nM Low DOI: 10.1021/acs.jmedchem.1c01207
PMID: 34939411 		1