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Dcn1-ubc12-IN-3

E3L061587
Internal ID: BDB061587
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB061587/BDB061587.sdf
Basic Properties
Compound ID
E3L061587
Internal ID
BDB061587
Molecular formula
C30H30N8O3S2
Molecular weight
614.757000
Exact mass
614.188229
XLogP
5.1859
TPSA
124.1000
HBA / HBD
12 / 0
Rotatable bonds
12
Heavy atoms / rings
43 / 5
Activity summary
IC50 unknown 2.30000000 nM
1 activity record(s) imported
InChIKey
NLAXDJPKEZXJJM-UHFFFAOYSA-N
SMILES
COc1cc(-c2nc(SCc3ccc4ccccc4c3)nc(Sc3nnnn3CCN(C)C)c2C#N)cc(OC)c1OC
Aliases
BDBM50584177 (preferred) Dcn1-ubc12-IN-3 (source_name) BDBM50584177 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50584177 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50584177 Open - 10.1021/acs.jmedchem.1c01207 PMID: 34939411
PubChem CID163196275 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(-c2nc(SCc3ccc4ccccc4c3)nc(Sc3nnnn3CCN(C)C)c2C#N)cc(OC)c1OC keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB061587/BDB061587.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB061587/BDB061587.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB061587/BDB061587.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB061587/BDB061587.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB061587/BDB061587.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50584177 IC50 2.3 nM Very high DOI: 10.1021/acs.jmedchem.1c01207
PMID: 34939411 		1