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BDBM50594278

E3L062124
Internal ID: BDB062124
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB062124/BDB062124.sdf
Basic Properties
Compound ID
E3L062124
Internal ID
BDB062124
Molecular formula
C18H15ClN4
Molecular weight
322.799000
Exact mass
322.098524
XLogP
3.7379
TPSA
67.6300
HBA / HBD
3 / 1
Rotatable bonds
3
Heavy atoms / rings
23 / 3
Activity summary
IC50 unknown 6110.00000000 nM
1 activity record(s) imported
InChIKey
MNXZGNNUAWVYEX-UHFFFAOYSA-N
SMILES
Cn1cnc(-c2ccc(CN)cc2Cl)c1-c1ccc(C#N)cc1
Aliases
BDBM50594278 (preferred) 4-[5-[4-(Aminomethyl)-2-chlorophenyl]-3-methylimidazol-4-yl]benzonitrile (source_name) BDBM50594278 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50594278 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50594278 Open - 10.7270/Q2PG1WRN PMID: 35704853
PubChem CID168285491 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1cnc(-c2ccc(CN)cc2Cl)c1-c1ccc(C#N)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB062124/BDB062124.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB062124/BDB062124.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB062124/BDB062124.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB062124/BDB062124.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB062124/BDB062124.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM50594278 IC50 6110 nM Low DOI: 10.7270/Q2PG1WRN
PMID: 35704853 		1