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BDBM50594297

E3L062143
Internal ID: BDB062143
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB062143/BDB062143.sdf
Basic Properties
Compound ID
E3L062143
Internal ID
BDB062143
Molecular formula
C23H20N4
Molecular weight
352.441000
Exact mass
352.168797
XLogP
4.9780
TPSA
67.6300
HBA / HBD
3 / 1
Rotatable bonds
2
Heavy atoms / rings
27 / 4
Activity summary
IC50 unknown 10560.00000000 nM
1 activity record(s) imported
InChIKey
GDUWTNSBKPOWRR-UHFFFAOYSA-N
SMILES
Cc1cc(N)cc(C)c1-c1ncn(C)c1-c1ccc(C#N)c2ccccc12
Aliases
BDBM50594297 (preferred) 4-[5-(4-Amino-2,6-dimethylphenyl)-3-methylimidazol-4-yl]naphthalene-1-carbonitrile (source_name) BDBM50594297 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50594297 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50594297 Open - 10.7270/Q2PG1WRN PMID: 35704853
PubChem CID168288691 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(N)cc(C)c1-c1ncn(C)c1-c1ccc(C#N)c2ccccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB062143/BDB062143.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB062143/BDB062143.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB062143/BDB062143.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB062143/BDB062143.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB062143/BDB062143.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM50594297 IC50 10560 nM Low DOI: 10.7270/Q2PG1WRN
PMID: 35704853 		1